Academia

Journal publications
2017.
Fiorini, N. et al. New Relevance Search Algorithm for PubMed. In prep.
2017.
Fiorini, N., Lipman, D.J., Lu, Z. How intelligent users are improving PubMed. Submitted.
2017.
Fiorini, N., Lipman, D.J., Lu, Z. Towards PubMed 2.0. eLife.
2017.
Kim, S., Fiorini, N., Wilbur, W.J, Lu, Z. Bridging the gap: incorporating a semantic similarity measure for effectively mapping PubMed queries to documents. Journal of Biomedical Informatics, Elsevier.
2017.
Anekalla, K.R., Courneya, J.P., Fiorini, N., Lever, J., Muchow, M., Busby, B. PubRunner: A light-weight framework for updating text mining results. F1000 research, Hackathon collection.
2016.
Fiorini, N., Harispe, S., Ranwez, S., Montmain, J., Ranwez, V. Fast and reliable inference of semantic clusters. Knowledge-Based Systems.
2015.
Fiorini, N., Ranwez, S. Montmain, J., Ranwez, V. USI: a fast and accurate approach for conceptual document annotation. BMC Bioinformatics, 16:83.
2014.
Fiorini, N., Lefort, V., Chevenet, F., Berry, V. and Chifolleau, A.-M. CompPhy: a web-based Collaborative Platform for Comparing Phylogenies. BMC Evolutionary Biology 2014, 14:253.

International conferences
2017.
Fiorini, N., Lu, Z. New Relevance Search Algorithm for PubMed. Proceedings of AMIA 2017 Annual Symposium.
2017.
Mohan, S., Fiorini, N., Kim, S., Lu, Z. Deep Learning for Biomedical Information Retrieval: Learning Textual Relevance from Limited Click Logs. Proceedings of the 2017 ACL Workshop on BioNLP.
2016.
Medjkoune, M., Harispe, S., Montmain, J., Cariou, S., Fanlo, J.-L., Fiorini, N.. Towards a Non-oriented Approach for the Evaluation of Odor Quality. Proceedings of IPMU 2016, 16th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Series: Communications in Computer and Information Science, Vol. 610, Springer.
2015.
Fiorini, N., Ranwez, S., Harispe, S., Montmain, J., and Ranwez, V. USI at BioASQ 2015: a Semantic Similarity-Based Approach for Semantic Indexing. Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), CEUR Workshop Proceedings 1391.
2014.
Fiorini, N., Ranwez, S., Montmain, J. and Ranwez, V. Coping with imprecision during a semi-automatic conceptual indexing process. Proceedings of IPMU 2014, 15th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Series: Communications in Computer and Information Science, Vol. 444, Springer.

Invited talks
2017.
New Relevance Search in PubMed. CBB retreat, NCBI/NLM/NIH, USA.
2017.
PubMed Labs: A Sandbox Toward PubMed 2.0. Pi day, NIH, USA.
2015.
Intelligent machines that help humans face huge data. University of Graz, Austria.

Academic awards and recognitions
2017.
NLM Special Act or Service Group Award.
2017.
NIH Fellows Award for Research Excellence 2018.

French conferences
2015.
Fiorini, N., Harispe, S., Ranwez, S. Montmain, J., Ranwez, V. Annotation sémantique de clusters. Proceedings of ROADEF 2015.
2014.
Fiorini, N., Ranwez, S., Ranwez, V. and Montmain, J. Indexation conceptuelle par propagation. Application à un corpus d’articles scientifiques liés au cancer.
Proceedings of CORIA 2014.

PhD thesis
2015.
Semantic similarities at the core of generic indexing and clustering approaches. Montpellier University, France.